Multilayer Perceptron Classifier for Worldwide Antibiotic Usage and Resistance Prediction

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A Longitudinal Study on Effective Environmental, Economical, and Social Predictors from 2003 to 2018 in 145 Countries

View the Project on GitHub ThatAquarel/health

Authors

Team

Tian Yi Xia1, Vlad Marinescu1, MinSeo Hur1, Ashwini Adhikari1, Theodore Philipe2, Jessica Liddell2

1Youreka Montreal, 2McGill University

Abstract

Antibiotic resistance (ABR) is a growing global health concern that threatens the future of human wellbeing. The leading causes of increased ABR—excessive and inappropriate use of antibiotics—can be linked to a diverse array of multidisciplinary environmental factors, largely those related to the healthcare, agricultural, and food industries. Here, we employ machine learning to understand antibiotic resistance trends, utilizing a dataset of 804 socioeconomic, environmental, and demographic indicators to identify the most effective predictors of and factors contributing to ABR, and predict antibiotic resistance for years with available data using the model. We predicted that machine learning would be able to accurately predict antibiotic resistance and that the significant predictors would be diverse, though primarily environmental-related. We found that global antibiotic use and resistance risk has predictables trends by means of machine learning, with our models’ accuracy being above 95%. We also found that the best predictors of ABR were most often environmental factors. Nonetheless, the significance of a diverse array of factors indicates that antibiotic use and resistance is an inherently multidisciplinary issue. Overall, our study can be used to inform policymakers across all disciplines to implement measures to mitigate the rise of antibiotic resistance.

Poster

Poster

Results

Confusion matrices in predicting total antibiotic usage

Predicted and actual total antibiotic usage category confusion matrix for training data

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Confusion matrix of testing prediction

Predicted and actual total antibiotic usage category confusion matrix for testing data

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Confusion matrix of testing prediction

Correspondence between top significant indicators and total antibiotic usage

Worldwide analysis of 2022

Top significant indicators, all categories

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Clustermap of top 100 indicators

Top significant indicators, environmental

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Clustermap of top 100 environmental indicators

Prediction of total antibiotic usage and risk of resistance, category by country

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Predictions map

Paper

Machine Learning for Worldwide Antibiotic Usage and Resistance Prediction: A Longitudinal Study on Effective Environmental, Economical, and Social Predictors

Poster References